Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRP | rs3836296 | chr3:100018802 | ACT/A | 2.36E-5 | 210 | 16.43 | 18.47 | 4.53 | KM Plot |
KIRP | rs3840694 | chr8:30033209 | T/TA | 1.51E-6 | 208 | 14.8 | 17.52 | 0.2 | KM Plot |
KIRP | rs3841208 | chr10:75568759 | T/TAGAA | 0 | 214 | 16.53 | 14.83 | 2.47 | KM Plot |
KIRP | rs3842502 | chr1:95285897 | C/CCCCAGA | 7.69E-5 | 209 | 16.43 | 17 | 13.17 | KM Plot |
KIRP | rs3843939 | chr10:75578948 | T/C | 0 | 212 | 16.53 | 14.95 | 4.07 | KM Plot |
KIRP | rs3850304 | chr14:59895019 | G/A | 0.000108 | 209 | 16.5 | 14.1 | 6.63 | KM Plot |
KIRP | rs3860341 | chr1:95280100 | T/A | 0.000175 | 208 | 12.3 | 16.93 | 16.43 | KM Plot |
KIRP | rs3860343 | chr1:95281164 | A/G | 3.54E-7 | 212 | 11.32 | 15.9 | 16.5 | KM Plot |
KIRP | rs3860344 | chr1:95282344 | G/A | 3.53E-6 | 213 | 16.43 | 16.97 | 13.17 | KM Plot |
KIRP | rs3860346 | chr1:95284062 | A/G | 1.23E-6 | 214 | 16.43 | 16.93 | 12.3 | KM Plot |
KIRP | rs3886314 | chr1:95279945 | A/C | 1.71E-7 | 209 | 11.2 | 16.93 | 16.47 | KM Plot |
KIRP | rs3890119 | chr1:95284105 | T/A | 3.41E-6 | 214 | 16.43 | 16.93 | 12.3 | KM Plot |
KIRP | rs389404 | chr19:6693387 | G/A | 0.000473 | 201 | 18 | 13.6 | 3.87 | KM Plot |
KIRP | rs3895887 | chr5:36082876 | G/T | 4.58E-7 | 213 | 17.02 | 10.83 | 6.83 | KM Plot |
KIRP | rs3904550 | chr1:95277963 | A/G | 3.19E-6 | 208 | 16.53 | 14.83 | 11.32 | KM Plot |